Notes:
It is not accurate to compare the processing power of a computer, such as IBM Watson, to the processing power of a human brain in terms of million instructions per second (MIPS). The human brain and computers have different architectures and operate in different ways, making it difficult to directly compare their processing power.
It is generally accepted that the human brain is much more complex and powerful than any computer currently in existence. It is capable of performing a wide range of tasks, including perception, decision-making, learning, and problem-solving, in a way that is not yet fully understood.
In contrast, computers are designed to perform specific tasks quickly and efficiently, but their capabilities are limited to the instructions that are programmed into them. While computers can perform some tasks faster and more accurately than humans, they are not able to match the flexibility and adaptability of the human brain.
BrainML is a system that provides a standard XML (eXtensible Markup Language) format for exchanging neuroscience data. It is designed to allow researchers to share and access data from a wide range of neuroscience studies and experiments, including data from animal and human studies, in a standardized and interoperable way.
BrainML is based on the concept of metadata, which is data that describes other data. It uses a set of standardized XML tags and elements to describe the details of a particular dataset, such as the type of data it contains, the methods used to collect the data, and the context in which the data was collected. This allows researchers to easily understand and interpret the data, and to compare and combine data from different studies and experiments.
BrainML is often used in combination with other tools and technologies, such as database systems and visualization tools, to facilitate the storage, analysis, and visualization of neuroscience data. It is also used to support the development of standards and guidelines for the collection and reporting of neuroscience data.
2D brain simulation and 3D brain simulation are two different approaches to modeling and simulating the brain and its functions.
2D brain simulation involves creating a computer model of the brain that is represented in two dimensions, typically using a flat, 2D image or map. This approach can be useful for visualizing and analyzing certain aspects of brain function, such as the connectivity of brain regions or the flow of information between different areas of the brain.
3D brain simulation involves creating a computer model of the brain that is represented in three dimensions, typically using a 3D image or model. This approach allows for a more realistic and detailed representation of the brain and its structures, and can be useful for studying the relationships between different brain regions and the functions they perform.
Hrafn Thorisson’s Brain in interactive 3D is an example of a web-based application that allows users to view and interact with 3D images of a brain that have been created using MRI data.
Resources:
- act-r, like other influential cognitive architectures (including soar, clarion, and epic), has a computational implementation as an interpreter of a special coding language, and in this case written in lisp.
- brainmaps is an nih-funded interactive zoomable high-resolution digital brain atlas and virtual microscope that is based on more than 20 million megapixels (60 terabytes) of scanned images.
- brainvoyager qx contains needed for the advanced analysis and visualization of structural and functional magnetic resonance imaging (mri) data.
- cogent is a graphical environment for cognitive modelling (see also: webcogent).
- corticaldb is trying to build the new generation of applications based on the latest developments in neuroscience and artificial intelligence.
- fmri data center (fmridc) is a free database of fmri data used in peer reviewed studies.
- freesurfer is a set of automated tools for reconstruction of the brain’s cortical surface from structural mri data, and overlay of functional mri data.
- genesis (general neural simulation system) is a simulation environment for constructing realistic models of neurobiological systems.
- ikaros is an open infrastructure for cognitive modelling, including system-level models of the brain.
- nest simulator is neural simulation technology for simulating biologically realistic neuronal networks.
- neurobehavioral systems produces a stimulus delivery and experimental control program for neuroscience, called “presentation”.
- neuroconstruct is software for developing biologically realistic 3d neural networks.
- neurodatabase data server hosts a public neurophysiology database.
- neuroml is an xml model description language for defining and exchanging models based on the biophysical and anatomical properties of neurons.
- neuron is a simulation environment for modeling individual neurons and networks of neurons.
- psychopy is an open source software package, written in python, for generating experiments for neuroscience and experimental psychology.
- pynn (pronounced ‘pine’ ) is a simulator-independent language for building neuronal network models.
- snnap (simulator for neural networks and action potentials) is a tool for rapid development and simulation of realistic models of single neurons and neural networks.
- topographica is a software package for computational modeling of neural maps, funded by the nimh human brain project.
Wikipedia:
- Artificial brain
- Brain-computer interface
- Brainbow
- Brain mapping
- Brain-reading
- Comparison of behavioral experiment software
- Comparison of consumer brain-computer interfaces
- Computational neuroscience
- Computational neuroscience software
- Computer-aided diagnosis
- Connectionism
- Connectomics
- Cybernetic immortality
- Diffusion MRI
- List of neuroimaging software
- List of neuroscience databases
- Mind uploading
- Neural Computation
- Neural information processing systems
- Neurocomputational speech processing
- Neurocomputing
- Neuroimaging
- Neuroinformatics
- Neuromorphic engineering
- Neuroprosthetics
- Spiking neural network
References:
- Brain-Inspired Information Technology (2011)
- Computational Modeling and Simulation of Intellect: Current State and Future Perspectives (2011)
- The (Hopefully Near) Future of Language Technologies (2011)
- A world survey of artificial brain projects Part I: Large-scale brain simulations (2010)
- From Brains to Systems: Brain-Inspired Cognitive Systems (2010)
- World survey of artificial brains, Part II: Biologically inspired cognitive architectures (2010)
- The China-Brain Project Report on the First Six Months (2009)
- The China-Brain Project: Building China’s Artificial Brain Using an Evolved Neural Net Module Approach (2008)
- Robot Brains: Circuits and Systems for Conscious Machines (2007)
- Cognitive Systems: Information Processing Meets Brain Science (2006)
- Connectionism: A Hands-on Approach (2005)
- Brain Mapping: The Methods (2002)
- The Neural Simulation Language: A System for Brain Modeling (2002)
- Neuroinformatics: An Overview of the Human Brain Project (1997)
See also:
100 Best 3D Brain Videos | 100 Best Artificial Brain Videos | 100 Best Brain Simulation Videos | Artificial Brains | BECCA (Brain Emulating Cognitive Control Architecture) | Brain Simulation | HBP (Human Brain Project)
A 3D computational head model under dynamic head rotation and head extension validated using live human brain data, including the falx and the tentorium
YC Lu, NP Daphalapurkar, AK Knutsen… – Annals of biomedical …, 2019 – Springer
… A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium … Computational modeling procedure. The 3D head model was constructed based on T1 and DTI images …
Why is There No Successful Whole Brain Simulation (Yet)?
KM Stiefel, DS Brooks – Biological Theory, 2019 – Springer
… to the very specific ecological specializations of different animals seem to be largely ignored in the course of whole-brain simulation efforts, as … Towards a virtual C. elegans: a framework for simulation and visualization of the neuromuscular system in a 3D physical environment …
Segmentation algorithm of Mouse brain Magnetic Resonance Microimaging based on 3D texture feature Simulation and brain Map
S Rui – 2019 – pdfs.semanticscholar.org
… and whole brain simulation. Texture synthesis part: First, 39 brain regions in the individual map merged and deleted, and the generation and anatomical maps divided into three parts: firstly, the 39 brain regions in the individual map are merged and deleted. Then, the 3D texture …
Reconstruction and simulation of a scaffold model of the cerebellar network
S Casali, E Marenzi, KC Medini, C Casellato… – Frontiers in …, 2019 – frontiersin.org
… model has been developed and tested, allowing to incorporate axonal/dendritic field geometries specifically oriented in a 3D space and to … Hines et al., 2009) and a test workflow was integrated into a large-scale neuroinformatics infrastructure, the Brain Simulation Platform (https …
Spike Timing Dependent Plasticity Enhances Integrated Information at the EEG Level: A Large-scale Brain Simulation Experiment
K Fujii, H Kanazawa, Y Kuniyoshi – 2019 Joint IEEE 9th …, 2019 – ieeexplore.ieee.org
… To achieve this, we constructed (1) a large-scale brain simulation composed of spiking neuron models, (2) an EEG estimation system using … knowledge, this is the first system for estimating EEG signals based on spiking neuron activity and a realistic 3D morphological feature of …
Presenting a Simple Method of Brain Shift Estimation for Neuronavigations and Considering its Practicality
X Chen, R Shirai, K Masamune… – 2019 IEEE/SICE …, 2019 – ieeexplore.ieee.org
… 5). 115 Page 5. pre-brain simulation initial shape node A X (mm) Y (mm) (a) y?z coordinates (b) x?z coordinates Fig … (ii) (ii) (iii) (iii) A’intra (a) pre-brain (b) intra-brain Fig. 10: Corresponding nodes to the node A of the intra-brain based on the registration result by using 3D Slicer …
Exploring Complex Brain-Simulation Workloads on Multi-GPU Deployments
MA Vlag, G Smaragdos, Z Al-Ars, C Strydis – ACM Transactions on …, 2019 – dl.acm.org
… Exploring Complex Brain-Simulation Workloads on Multi-GPU Deployments … 4.1 Connectivity- network Generation To analyse the impact of network topology on performance, two naturally occurring topologies are studied, following a uniform or a 3D-Gaussian distribution [1]. In …
The” virtual DBS population”: five realistic computational models of deep brain stimulation patients for electromagnetic MR safety studies
B Guerin, MI Iacono, M Davids… – Physics in medicine …, 2019 – iopscience.iop.org
… and the brain has recovered. The head CT volume acquired after the first surgery is not enough to build a 3D model of the entire implant as it does not cover the IPG nor the extension cables. We therefore searched the database …
The Human Brain Project—Synergy between neuroscience, computing, informatics, and brain-inspired technologies
K Amunts, AC Knoll, T Lippert, CMA Pennartz… – PLoS …, 2019 – journals.plos.org
… of 12 subprojects—ie, mouse brain organization, human brain organization, systems and cognitive neuroscience, theory, neuroinformatics, brain simulation, medical informatics … 3D-PLI has a spatial resolution down to 1.3 ?m, which resolves most of the myelinated fibers, and …
How big data and high-performance computing drive brain science
S Chen, Z He, X Han, X He, R Li, H Zhu, D Zhao… – Genomics, Proteomics & …, 2019 – Elsevier
… Human Brain Project, Neuroinformatics; brain simulation; high-performance analytics and supercomputing; medical informatics; neuromorphic computing; neurorobotics; ethics and … JUROPA at the JSC has developed an ultrahigh-resolution three-dimensional (3D) human brain …
Blue Brain
R Chaudhari, S Bari – indusedu.org
… III. BRAIN SIMULATION Natural brain and simulated brain symposium Natural brain vs. simulated … methods. this compilation of data will provide information to the researchers to create a 3D replica of neuron to study it completely Figure …
The Blue Brain Technology
M SWETHA, N PRIYANKA, P VIKRAM – 2019 – pdfs.semanticscholar.org
… A full human brain simulation (86 billion neurons) should be possible to 2023 provided sufficient funding is received. II … This software will also collect data from related to the structure of the brain like 3D cortex geometry and the exact location of neuron groups …
RF heating of deep brain stimulation implants in open?bore vertical MRI systems: A simulation study with realistic device configurations
L Golestanirad, E Kazemivalipour… – Magnetic resonance …, 2019 – Wiley Online Library
… The 3D surfaces were exported to a computer?aided design tool (Rhino3D, Robert McNeal and Associates, Seattle, WA) in which lead … Reconfigurable coil technology can substantially reduce RF heating of bilateral deep brain simulation leads during MRI at 1.5 T: first in?vitro …
A new framework for assessing subject-specific whole brain circulation and perfusion using MRI-based measurements and a multi-scale continuous flow …
E Hodneland, E Hanson, O Sævareid… – PLoS computational …, 2019 – journals.plos.org
… our proposed method for whole brain simulation is schematically shown in Fig 1. Three dedicated MR acquisitions together with their appropriate data reconstruction and data post-processing are used to create the data-driven geometry: (i) A T1-weighted anatomical 3D data set …
A Mesh-Based Monte Carlo Study for Investigating Structural and Functional Imaging of Brain Tissue Using Optical Coherence Tomography
L Yi, L Sun, M Zou, B Hou – Applied Sciences, 2019 – mdpi.com
… A model of mesh-based Monte Carlo [14,16,17] for OCT (MMC-OCT) is used in this paper, which is useful for any complex three-dimensional (3D) bio-tissues. This work provides an analysis method and related data for brain simulation as well as help for experimental study …
RF heating of deep brain stimulation implants in open-bore vertical MRI systems
L Golestanirad, D Lampman, E Kazemivalipour… – bioRxiv, 2019 – biorxiv.org
… The 3D surfaces were exported to a CAD tool (Rhino3D®, Robert McNeal and Associates, Seattle, WA) … L. Golestanirad, B. Keil, J. Kirsch, J. Pilitsis, and LL Wald, “Reconfigurable coil technology can substantially reduce RF heating of bilateral deep brain simulation leads during …
Reconfigurable MRI coil technology can substantially reduce RF heating of deep brain stimulation implants: First in-vitro study of RF heating reduction in …
L Golestanirad, E Kazemivalipour, B Keil, S Downs… – PloS one, 2019 – journals.plos.org
… Image segmentation and 3D model construction are described in our previous work [20] … Amira software (Thermo Fisher Scientific, Waltham MA) was used for image segmentation and construction of the pre- liminary 3D surface of the leads …
Susceptibility mapping of the dural sinuses and other superficial veins in the brain
S Buch, Y Chen, EM Haacke – Magnetic resonance imaging, 2019 – Elsevier
… Results from the brain simulation (Fig … Fig. 2. A numerical 3D human brain model (a) was utilized to generate simulations for conventional SMV approach (b), extension of brain boundary using Taylor series expansion of the field approach (c) and the AS approach of introducing …
VR Re-Embodiment in the Neurorobotics Platform
S Weber, G Klinker – Mensch und Computer 2019-Workshopband, 2019 – dl.gi.de
… Both the user-controlled avatar and the brain-simulation-controlled robots are actors with their own agency … In 2018 IEEE Conference on Virtual Reality and 3D User Interfaces (VR). IEEE, 143–150. [4] Matthew Botvinick and Jonathan Cohen. 1998 …
A brief history of simulation neuroscience
X Fan, H Markram – Frontiers in neuroinformatics, 2019 – frontiersin.org
… brain and their own condition. From the Weight of the Heart to Brain Simulation. Humans see and feel, live and die, conscious of their own existence. They think and desire to understand themselves. About 3,000 years ago, in …
Constructing interconnected spherical hollow conductive networks in silver platelets/reduced graphene oxide foam/epoxy nanocomposites for superior …
C Liang, P Song, H Qiu, Y Zhang, X Ma, F Qi, H Gu… – Nanoscale, 2019 – pubs.rsc.org
… 8 Brain simulation exposed to electromagnetic radiation from the communication antenna … Model B: protected brain to the electromagnetic radiation by 3D AgPs/rGF/EP nanocomposites; (C–C??) map of the electric field distribution in the brain; (D–D??) map of the electric …
Analysis of Artificial Brain
D Bharti – Research Journal of Science and Technology, 2019 – indianjournals.com
… 3.3 INTERPRETING THE RESULTS: Running the Blue Brain simulation generates huge amounts of data … Architects at EPFL have worked with the Blue Brain developers to design a visualization interface that translates the Blue Gene data into a 3D visual representation of the …
Adapting CMA-ES for the Massively Parallelized Simulation of Neurons and Neural Circuits
T Kazawa, T Fukuda, A Goto… – … on Engineering and …, 2019 – dpi-proceedings.com
… Seven parameters are set in the virtual target neuron (neuron morphology was extracted antennal lobe projection neuron 3d slice data from … of how neural networks realize thinking and its application to artificial intelligence: Bottom-up whole insect brain simulation to understand …
Review on the Artificial Brain Technology: BlueBrain
M Vinny, P Singh – 2019 – a2zjournals.com
… It renders a 3D representation of neu- rons generated by NEURONS by taking output from the Hodgkin-Huxley simulation produced in NEURON [5]. This helps in monitoring the activation potentials as they propagate … A Foundation for the Whole Brain Simulation [11]: Another …
The Human Brain Project—Synergy between neuroscience, computing, informatics, and brain-inspired technologies
AC Knoll, VK Jirsa, E D’Angelo – 2019 – pure.uva.nl
… of 12 subprojects—ie, mouse brain organization, human brain organization, systems and cognitive neuroscience, theory, neuroinformatics, brain simulation, medical informatics … 3D-PLI has a spatial resolution down to 1.3 ?m, which resolves most of the myelinated fibers, and …
The physics of brain network structure, function and control
CW Lynn, DS Bassett – Nature Reviews Physics, 2019 – nature.com
… Thus far, we have focused on the top- ological properties of brain networks. However, brain networks are also physically constrained to exist within a tight 3D volume, and their structural connections are metabolically driven to minimize total wiring dis- tance60,77,90 …
Neural Signaling and Communication
SH Jabeen, N Ahmed, ME Sandhu… – New Frontiers in …, 2019 – intechopen.com
… The human brain shows a discrete spatiotemporal organization that aids brain function and can be imitated via local brain simulation [3]. Such disturbances to local cortical … Conjointly, these scales specify the axes of a 3D space in which any synthesis of brain network data lives …
Reconfigurable MRI technology for low-SAR imaging of deep brain stimulation at 3T: Application in bilateral leads, fully-implanted systems, and surgically modified …
E Kazemivalipour, B Keil, A Vali, S Rajan, B Elahi… – NeuroImage, 2019 – Elsevier
Skip to main content Skip to article …
A Mesh-Aware Ball-Pivoting Algorithm for Generating the Virtual Arachnoid Mater
H Seo, T Kin, T Igarashi – … Conference on Medical Image Computing and …, 2019 – Springer
… The arachnoid mater by the MABPA is useful for deformable brain simulation such as a virtual cerebral aneurysm clipping surgery, because collision detection between the membrane and the brain is basically unnecessary … The 3D case is similar to the 2D case (Fig …
Developing a dynamic simulator for endoscopic intraventricular surgeries
CE Deopujari, VS Karmarkar, ST Shaikh… – Child’s Nervous …, 2019 – Springer
… Keywords. Brain simulation model Endoscopic third ventriculostomy Intraventricular tumors Septostomy Tumor biopsy. Introduction … 5). The bulge of the caudate nucleus is created at the time of 3D printing. Open image in new window Fig. 5. Fig. 5 …
Challenges of processing and analyzing big data in mesoscopic whole-brain imaging
A Li, Y Guan, H Gong, Q Luo – Genomics, Proteomics & …, 2019 – ncbi.nlm.nih.gov
… brain functions on supercomputers [16], [17]. In 2016, HBP released a platform on its official website, providing researchers with brain simulation, visualization, and computational tools. The Brain Research through Advancing …
Neural Interactome: Interactive Simulation of a Neuronal System
J Kim, W Leahy, E Shlizerman – Frontiers in Computational …, 2019 – ncbi.nlm.nih.gov
… We examine scenarios that were experimentally studied, such as touch response circuit, and explore new scenarios that did not undergo elaborate experimental studies. Keywords: C. elegans, brain simulation, connectome, neural dynamics, network visualization. Introduction …
Development of the Neurorobotic Mouse
P Lucas, S Oota, J Conradt… – … Conference on Cyborgs …, 2019 – mediatum.ub.tum.de
… Regarding the embodiment of the brain simulation, as a consequence, it is a natural approach to employ the virtual mouse body [7] as a … length of the tail with another actuator (Figure 1). This mechanism consisted of multiple elastic joints created within the 3D printed model …
The Molecular Basis of Neural Memory: Part 8. Case Studies of “Neuro-mimetic” Technologies
G Marx, C Gilon – pdfs.semanticscholar.org
… Awareness of the nECM around neurons and a molecular code for emotions, missing in both the IBM chip and the Blue Brain simulation, could lead to better modeling of mentation processes relating to neural memory … Architecture 2D 3D …
Structural Brain Mapping Using Antibody-Conjugated Gold Nanoparticles and X-ray Microscopy
LT Collins – 2019 – pdfs.semanticscholar.org
… investigation of the complete system. Although whole-brain simulation is still fairly distant, this study takes some early steps towards devising an imaging pipeline that may enable such a lofty aim … C. (2019). Computational 3D histological phenotyping of whole zebrafish by X-ray …
A simple geometric analysis method for measuring and mitigating RF induced currents on Deep Brain Stimulation leads by multichannel transmission/reception
Y Eryaman, N Kobayashi, S Moen, J Aman, A Grant… – NeuroImage, 2019 – Elsevier
Skip to main content Skip to article …
Towards Model-Based Characterization of Biomechanical Tumor Growth Phenotypes
D Abler, P Büchler, RC Rockne – International Symposium on …, 2019 – Springer
… 2. Schema of brain simulation domain \(\varOmega \) with subdomains \(\varOmega _i\) for white matter (WM), grey matter (GM), surrounding cerebrospinal fluid (CSF … As next steps, we plan to characterize this approach in 3D and to investigate its application to patient MR images …
Artificial intelligence and advanced technologies-some case studies from European research space
D Gotseva, R Trifonov, P Stoynov – psp-ltd.com
… Printivo presents Eve – desktop 3D bioprinter, which has been specialized for the creation of 3D human tissue grafts in any size and … Released in April 2016, the Human Brain Project’s Brain Simulation Platform (BSP) – HBP-BSP (2018) – is one of the six internet-accessible ICT …
Design of a bio-inspired compliant quadruped robot for research on closed-loop locomotion control
G Urbain, A Vandesompele, J Dambre – 2nd HBP Student …, 2019 – biblio.ugent.be
… Mouse Brain Organisation, Human Brain Organisation, Systems and Cognitive Neuroscience, Theoretical Neuroscience, Neuroinformatics, Brain Simulation, High-Performance … visions in the film Transcendence A software pipeline for efficient processing of 3D high- resolution …
Towards Human Brain Image Mapping for Emotion Digitization in Robotics
A Roshdy, AS Karar, A Al-Sabi… – … Conference on Bio …, 2019 – ieeexplore.ieee.org
… Palaynov, S. Khayrulin, SD Larson, and A. Dibret, “Towards a virtual C. Elegans: A framework for simulation and visualization of the neuromuscular system in a 3d physical environment … Available: https://www.humanbrainproject.eu/en/brain-simulation/whole-mouse- brain-model …
The case for emulating insect brains using anatomical “wiring diagrams” equipped with biophysical models of neuronal activity
LT Collins – Biological cybernetics, 2019 – Springer
… 2018). c X-ray microtomography (XRM) passes X-rays through a sample positioned on a rotating stage and allows 3D reconstruction … used image data from the FlyCircuit database to develop a rough Drosophila whole-brain simulation (Huang et al. 2019) …
RF-induced heating in tissue near bilateral DBS implants during MRI at 1.5 T and 3T: The role of surgical lead management
L Golestanirad, J Kirsch, G Bonmassar, S Downs… – NeuroImage, 2019 – Elsevier
… Amira 5.3 (Thermo Fisher Scientific, Waltham MA) was used for image segmentation and construction of the preliminary 3D surface of the leads. First, a thresholding mask was applied to select the hyper dense DBS lead from CT images using Amira’s segmentation module (Fig …
Multiple Sclerosis multimodal lesion simulation tool (MS-MIST)
AC da S Senra Filho, FH Simozo… – Biomedical Physics …, 2019 – iopscience.iop.org
… database. It is worth saying that all the lesion segmentation processes were made using a 3D evaluation, considering all the image space … This registration process uses BRAINSFit [24, 25], available as a 3D Slicer package. Hence …
Optimization of a Spherical Decoupled Mechanism for Neuro-Endoscopy Based on Experimental Kinematic Data
T Essomba, LN Vu, CT Wu – Journal of Mechanics – cambridge.org
… During these motion capture experimentation, only the left side of the brain simulation model has been explored due the location of the Burr hole on the skull 3-D model … insertion of the endoscope through the brain 3D model Burr hole, so this velocity shall not be considered …
Memristive neural networks: A neuromorphic paradigm for extreme learning machine
H Liang, H Cheng, J Wei, L Zhang… – … on Emerging Topics …, 2019 – ieeexplore.ieee.org
… LARGE-SCALE implementation of neuromorphic compu- tation and brain simulation have attracted researches from both academia and enterprises over the past few … Nowadays, GPU is no longer limited to 3D graphics processing, which is able to provide several times or even …
Measurement of the branching fractions for B+-> D*+ D-K+, B+-> D*-D+ K+, and B0-> D*-D0 K+ decays
P Stefko, T Nakada, M Karpov, T Kippenberg, MS Tyloo… – Nano Letters, 2019 – epfl.ch
Skip to content Logo EPFL, École polytechnique fédérale de Lausanne …
Deep brain stimulation of the hypothalamus leads to increased metabolic rate in refractory obesity
AC Whiting, EF Sutton, CT Walker, J Godzik… – World neurosurgery, 2019 – Elsevier
… K. Chapple, M. Lambert, FA PonceComplication rates, lengths of stay, and readmission rates in “awake” and “asleep” deep brain simulation … 385-394. Google Scholar. 18 DG Gobbi, TM PetersGeneralized 3D nonlinear transformations for medical imaging: an object-oriented …
ICEI/Fenix: HPC and Cloud infrastructure for computational neuroscientists
JM Eppler, A Carstensen… – NEST Conference 2019, 2019 – indico-jsc.fz-juelich.de
… After that, point-neurons have been replaced by detailed 3D multi-compartment neuron models … This research was supported by the HBP Brain Simulation Platform funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the …
Bridging structure and function with brain network modeling
M Schirner – 2019 – refubium.fu-berlin.de
… Wilson & Cowan model57. Examples for voltage-based models include the Stefanescu & Jirsa 3D model52, the Larter & Breakspear model58 or the Generic 2D oscillator53 … BOLD by fitting whole-brain simulation results with fMRI activity to estimate global network …
CoreNEURON: an optimized compute engine for the NEURON simulator
P Kumbhar, M Hines, J Fouriaux… – Frontiers in …, 2019 – frontiersin.org
… To address this issue, CoreNEURON organizes channel properties into the Structure of Arrays (SoA) memory layout (Figure 3D). This allows efficient vectorization and efficient memory bandwidth utilization for all channel and synapse computations …
Construction of a risk model through the fusion of experimental data and finite element modeling: Application to car crash-induced TBI
SS Ahmadisoleymani, S Missoum – Computer methods in …, 2019 – Taylor & Francis
… The method is based on a multi-level framework constituted of a FE crash simulation with a dummy and a FE brain simulation … b. Perform a crash simulation and a brain simulation for each DOE sample. For each, evaluate the CSDM injury metric (see Section 3.2) …
From Birth to the Grave in the New Age: The Challenges of Whole Brain Emulation in the Portuguese Legal Concepts of Personhood and Death
M Fernandes – Available at SSRN 3459151, 2019 – papers.ssrn.com
… [Online]. [Accessed 14 August 2019]. Available from: https://www.humanbrainproject.eu/en/ brain-simulation/whole-mouse- brain-model … connections of the brain. Then, the second step, which the author calls “translation”, is a 3D reconstruction of the …
SHARQnet–Sophisticated harmonic artifact reduction in quantitative susceptibility mapping using a deep convolutional neural network
S Bollmann, MH Kristensen, MS Larsen… – … für Medizinische Physik, 2019 – Elsevier
… For training SHARQnet, we simulated 1000 realistic background fields overlaid on top of a synthetic brain simulation provided with the MEDI toolkit [29] … two adaptation layers with 128 and 64 filters respectively and a kernel size of 1. The network expects 3D background field …
Oxygen and brain death; back from the brink
DM Bailey – Experimental physiology, 2019 – Wiley Online Library
… AB. It has been estimated that given its structural complexities, the computational power required to simulate human brain function (such as the Blue Brain simulation, a prototype for the Human Brain Project) needs to fall within the …
Diffusion MR imaging acquisition and analytics for microstructural delineation in preclinical models of TBI
NG Harris, A Paydar, GS Smith… – Journal of neuroscience …, 2019 – Wiley Online Library
… One additional benefit of using 3D data acquisition is that the read?out direction can be set to the longest axis of the brain—the antero?posterior direction which not only restricts the time expensive phase?encoding to the shorter medial?lateral and dorsal?ventral axis, but it …
10 Deep Brain Stimulation for Dystonia—Clinical Review and Surgical Considerations
A Butala, T Wojtasiewicz, K Mills… – Deep Brain …, 2019 – thieme-connect.com
… Before surgery, an MRI is obtained to assist with target planning that includes gadolinium-enhanced volumetric T1 imaging as well as T2 volumetric imaging with fast spin-echo, 3D gradient echo, and axial inversion recovery images …
Digital immortality and virtual humans
M Savin-Baden, D Burden – Postdigital Science and Education, 2019 – Springer
… The growth of personality capture and levels of brain simulation as well as computationally inspired life after death may change the future of religion, affect understandings of the … This is the process of memorialising people through avatars in online games and 3D virtual worlds …
EEG source imaging: a practical review of the analysis steps
CM Michel, D Brunet – Frontiers in neurology, 2019 – ncbi.nlm.nih.gov
… These properties (local skull thickness and 3D electrode position) are then incorporated in the lead field, which determines how the electric activity at a certain electrode is related to the activity of the different sources in the brain … 3D Electrode Positions …
Why the Brain Matters: A Teacher Explores Neuroscience
J Tibke – 2019 – books.google.com
Page 1. Page 2. Page 3. Page 4. A TEACHER EXPLORES EUROSCIEN C&RWIN Page 5. Corwin A SAGE company 2455 Teller Road Thousand Oaks, California 91320 (0800)233-9936 www.corwin.com SAGE Publications Ltd …
Estimation of crystal timing properties and efficiencies for the improvement of (joint) maximum-likelihood reconstructions in TOF-PET
A Rezaei, G Schramm, K Van Laere… – IEEE transactions on …, 2019 – ieeexplore.ieee.org
… IV. RESULTS A. Brain Simulation The noisiest 3D simulation had a total trues count of 112 M counts, which resulted in a mean crystal count of 5.6 K, respectively. A two fold increase of the mean crystal count (11.2 K (225 M), 22.2 …
Colonizing the Mind
R Manzocco – Transhumanism-Engineering the Human Condition, 2019 – Springer
… Parallel to neurotechnology, we must mention a topic of great interest to Transhumanists, namely, brain simulation – in other words, the attempt to … 9. R. Mailler, J. Avery, J. Graves, N. Willy, A Biologically Accurate 3D Model of the Locomotion of Caenorhabditis Elegans, 2010 …
Dynamic PET cardiac and parametric image reconstruction: a fixed-point proximity gradient approach using patch-based DCT and tensor SVD regularization
I Häggström, Y Lin, S Li, A Krol, Y Xu… – arXiv preprint arXiv …, 2019 – arxiv.org
… (i,j,k)=(1,1,1) T (i, j, k)2 )1/2 , (15) for T ? Rm×n×? , and the operator fold(·) turns ? m×n matrices into a 3D tensor as fold(T (1), T (2),… T (?)) = T . The algorithms developed in this paper are based upon the FP proximity gradient (PG) algorithm described by [26], [27] …
Quantitative Susceptibility Mapping of Magnetic Quadrupole Moments
J Cho, D Zhou, Y Kee, P Spincemaille… – Concepts in Magnetic …, 2019 – hindawi.com
Concepts in Magnetic Resonance Part A is a peer-reviewed, Open Access journal that brings together clinicians, chemists, and physicists involved in the application of magnetic resonance techniques. The journal welcomes contributions predominantly from the fields of magnetic …
Parameter tuning differentiates granule cell subtypes enriching the repertoire of retransmission properties at the cerebellum input stage
S Masoli, M Tognolina, U Laforenza, F Moccia… – bioRxiv, 2019 – biorxiv.org
… The optimization Python notebook will be made available as a use case on the Brain Simulation Platform (BSP) along with the BluePyOpt version of GrC … 3D) was evaluated in a characteristic point corresponding to the peak of accelerating GrCs, ie using IFC at 10 pA and SFC at …
Hypergraph Learning for Fundamental Shape Detection
S Ramanathan, M Ramasundaram – Procedia Computer Science, 2019 – Elsevier
… A deep brain simulation tool was developed based on a statistical method for the recognition of the changes [8, 9]. Instead of recognizing the boundary … Calculating the loaded diameter for the protein structure was done in the model named similarity of 3D protein models [15, 16] …
Involvement of white matter in cognitive flexibility in patients with right hemisphere glioma.
SL Hartung – 2019 – dspace.library.uu.nl
… Based on the availability and quality of the images, the protocol included T1-weigthed 3D images, T2- weighted 3D images and FLAIR-weighted 3D images. In each image volume, 19 – 640 axial … ITK-SNAP: Volume measurement Brain Simulation Tool: Connectivity analyses …
Emerging Phenomenological and Biological Principles of Consciousness: Top Insights of Prevailing Models, Concepts, and Observations
R Jerath, C Beveridge – World Journal of Neuroscience, 2019 – scirp.org
We are all aware that our experience is structured into left and right, up and down, and we can understand from our own experience that consciousness is unified into a singular whole. Although we can understand such basic phenomenological axioms of experience, there are many …
High resolution in-vivo MR-STAT using a matrix-free and parallelized reconstruction algorithm
O van der Heide, A Sbrizzi, PR Luijten… – arXiv preprint arXiv …, 2019 – arxiv.org
… 2. Set s = s + ?jmj end for Return s Note that Algorithm 2 only requires the allocation of two vectors of length Nt, which is feasible on modern computing architectures for both 2D and 3D acquisitions. The computation of s can then … algorithm. Numerical Brain Simulation …
Meta-data management and quality control for the medical informatics platform
A Demiraj, K Karozos, I Spartalis… – Proceedings of the 23rd …, 2019 – dl.acm.org
… an ambitious goal six Information and Communication Technology (ICT) platforms have been created: the Neuroinformatics Platform1, the Brain Simulation Platform2 … LORIS’ images visualiza- tion and quality control features for the clinicians to be able to view in 3D the collected …
Shape Optimization of an Electric Dipole Array for 7 Tesla Neuroimaging
IRO Connell, RS Menon – IEEE transactions on medical …, 2019 – ieeexplore.ieee.org
… magnitude control over pulse waveforms. A low flip-angle 3D gradient-recalled-echo volume was acquired for each transmit channel, according to the methods presented by Van de Moortele et al. (33), to produce relative B1 …
FROM BIRTH TO THE GRAVE IN THE NEW AGE
MM de Brito Fernandes, M Noorman, C Cuijpers – 2019 – researchgate.net
… [Online]. [Accessed 14 August 2019]. Available from: https://www.humanbrainproject.eu/en/ brain-simulation/whole-mouse- brain-model … connections of the brain. Then, the second step, which the author calls “translation”, is a 3D reconstruction of the …
Comparison of gradient echo and gradient echo sampling of spin echo sequence for the quantification of the oxygen extraction fraction from a combined quantitative …
S Hubertus, S Thomas, J Cho, S Zhang… – Magnetic resonance …, 2019 – Wiley Online Library
… A 3D multi gradient (recalled) echo sequence (GRE) was used for the QSM analysis: TR = 61 ms; TE 1 = 4.5 ms; ?TE = 5.5 ms; 8 echoes; matrix size = 256 × 192 × 72; voxel size = 0.9 × 0.9 × 1.4 mm 3 ; flip angle = 15°; GRAPPA factor = 2; unipolar readout; acquisition time = 7 …
Introduction to human neuroimaging
HO de Beeck, C Nakatani – 2019 – books.google.com
Page 1. cºmbºlºgE FUNDºmºnial OScºtt in Psychºlºgº Introduction to Human Neuroimaging HANS OP DE BEECK and CHIE NAKATANI Page 2. Introduction to Human Neuroimaging Developed specifically for students in the behavioral …
Memory Prosthesis: Is It Time for a Deep Neuromimetic Computing Approach?
V Cutsuridis – Frontiers in neuroscience, 2019 – ncbi.nlm.nih.gov
… The Human Brain Project (Human Brain Project) 4 although not directly contributing in the biohybrid/implant direction, it indirectly contributes to it with its neuromorphic hardware (1Mio cores Spinnaker machine) and brain simulation platform …
Combined sensing, cognition, learning, and control for developing future neuro-robotics systems: a survey
J Li, Z Li, F Chen, A Bicchi, Y Sun… – IEEE Transactions on …, 2019 – ieeexplore.ieee.org
… In order to reliably simulate the brain, some simulation methods take place at several separate organisational levels in the brain. Typically, the Brain Simulation Platform in the HBP is modelling the whole mouse brain at the point-neuron level from biological data …
A game theoretic network formation model for C. elegans neural network
M Khajezade, S Goleyaei, H Veisi – Frontiers in computational …, 2019 – frontiersin.org
Studying and understanding human brain structures and functions have become one of the most challenging issues in neuroscience today. However, the mammalian nervous system is made up of hundreds of millions of neurons and billions of synapses.This complexity made it impossible …
Quantitative approaches to unravel bone marrow adipocyte site-specificity and its implication in hematopoiesis
JCP Tratwal, OMN Torres-Quiroga, F Schyrr, PM Vidal… – Biomaterials, 2019 – epfl.ch
… 2019. num. 154, p. 1-7, e60475. DOI : 10.3791/60475. Detailed record. View at publisher. Injectable, scalable 3D tissue-engineered model of marrow hematopoiesis. DN Tavakol; J. Tratwal; F. Bonini; M. Genta; V. Ledebur de Antas de Campos et al. Biomaterials. 2019. Vol …
Tollip Controls Atherogenesis Through Regulation of Autophagy-mediated Degradation of Low-density Lipoprotein Receptor
D Baptista, A Roth, F Burger, R Fraga-Silva… – American Journal Of …, 2019 – epfl.ch
… Cardiovascular morphometry with high-resolution 3D magnetic resonance: First application to left ventricle diastolic dysfunction …
EEG Based BCI—Control Applications
D Bansal, R Mahajan – EEG-Based Brain-Computer Interfaces …, 2019 – books.google.com
… survey the effects of mental fatigue. Mental rotation task helps in identifying the ability of human brain to manipulate and correlate 2D or three-dimensional (3D) visual stimuli it is subjected to. The visual stimulus is mod- ified …
Whole integration of neural connectomics, dynamics and bio-mechanics for identification of behavioral sensorimotor pathways in Caenorhabditis elegans
J Kim, JA Santos, MJ Alkema, E Shlizerman – bioRxiv, 2019 – biorxiv.org
… highest weight in the first PC mode, and display their membrane voltages over 4 sec time (Fig 3D). Strikingly, the selected neurons are those that are experimentally linked to forward and backward movements; for forward locomotion PLM, PVR sensory neurons and VB motor …
A novel deep learning approach with data augmentation to classify motor imagery signals
Z Zhang, F Duan, J Solé-Casals… – IEEE …, 2019 – ieeexplore.ieee.org
… Layer Layer Type size stride Output dimension Activation Mode Features Extraction Input 1 (N,23,49,14,6) Dense 2 (N,23,49,14,2) ReLU Maxpooling 3D 3 (4,5,4) (2,2,2) (N,10,23,6,2) ReLU valid Flatten 4 (N,10×23×6×2) Dense 5 (N,200) ReLU Classifier Dense 6 (N,2) Softmax …
Targeting of the dentato-rubro-thalamic tract for MR-guided focused ultrasound treatment of essential tremor
TR Miller, J Zhuo, HM Eisenberg… – The …, 2019 – journals.sagepub.com
BackgroundMagnetic resonance-guided focused ultrasound ablation of the thalamic ventral intermediate nucleus is a safe and effective treatment for medically refractory essential tremor. However, in…
Beyond the suprachiasmatic nucleus: circadian rhythmicity shapes astrocyte morphology and neuronal function in hippocampal area CA1
JP McCauley, MA Petroccione, LY D’Brant, GC Todd… – bioRxiv, 2019 – biorxiv.org
bioRxiv – the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution.
Interactive science multimedia and visuospatial processing
JC Castro-Alonso, L Fiorella – … processing for education in health and …, 2019 – Springer
… anatomy tests with static images. Finally, Allen et al. (2016) investigated 47 medicine undergraduates learning neuroanatomy from both an interactive 3D brain simulation and cadaveric brains. Results indicated that performance on …
Advancements in Magnetic Resonance Poroelastography Using Intrinsic Activation
LM Solamen – 2019 – search.proquest.com
… architecture. 3D displacement data is encoded into an embedding, which is then de- coded to reconstruct the 2D µ image … ? is initialized by an estimate of the 3D material property distribution and updated by Gauss-Newton[9], Conjugate …
28th Annual Computational Neuroscience Meeting: CNS* 2019
I Bojak, T Nowotny – 2019 – centaur.reading.ac.uk
Page 1. 28th Annual Computational Neuroscience Meeting: CNS*2019 Book Published Version Creative Commons: Attribution 4.0 (CC-BY) Open Access Bojak, I. and Nowotny, T., eds. (2019) 28th Annual Computational Neuroscience Meeting: CNS*2019. BMC …
Artificial Intelligence and Clinical Psychology-Current Trends
M Tahan, F Zygoulis – Journal of Clinical & Developmental …, 2019 – papers.ssrn.com
… disregarded this approach. As a result, research about using 3D games as centered remedy gadgets have been conducted (Coyle et al., 2005) … (Kurzweil, 2005; Russell & Norvig, 2003). Moreover, full human brain simulation is a possibility in the near future …
THE EU-JAPANESE SUSTAINABLE 2050 INITIATIVES FOR THE NEW SILK ROAD
M Hoschek – EURÓPSKA VEDA – european-science.sk
… field of roadmap of European research infrastructure such as Cherenkov telescope array CTA, environmental science EISCAT 3D – a next … The Opportunities for Ageing Population and Human Brain Simulation Cooperation between the European and Japanese research base is …
Model-based lesion mapping of cognitive control using the Wisconsin Card Sorting Test
J Gläscher, R Adolphs, D Tranel – Nature communications, 2019 – nature.com
The role of the frontal lobes in cognition and behavior has long been enigmatic. Over the past decade, computational models have provided a powerful approach to understanding cognition and decision-making. Here, we used a model-based approach to analyze data from a classical …
PERSISTENCE OR PLASTICITY: EXAMINING HAND REPRESENTATIONS SUBSEQUENT TO CORTICOSPINAL TRACT LESIONS USING FMRI
A Schwarz – 2019 – udspace.udel.edu
… was first corrected for eddy currents and susceptibility. Next, the 3D image with no diffusion weighting (b=0) was brain-extracted using the BET tool, and then co … using whole brain FA value maps outputted by DTIFIT. First, the 3D image with no Page 26. 17 …
Curated model development using NEUROiD: A web-based NEUROmotor integration and Design platform
RS Iyengar, MV Pithapuram, AK Singh… – Frontiers in …, 2019 – frontiersin.org
… The Brain Simulation Platform 1 is designed for collaborative brain research and visualization (Abdellah et al., 2018) … At the macro scale, we consider 3D spinal section boundaries, their length, location, and alignment as anatomical properties …
Overview of quantitative susceptibility mapping using deep learning–Current status, challenges and opportunities
W Jung, S Bollmann, J Lee – arXiv preprint arXiv:1912.05410, 2019 – arxiv.org
… computation. For example, SHARQnet43 was designed for background field removal using a 3D Page 8. DL-QSM Review convolutional neural network and was trained on synthetic background fields overlaid on top of a brain simulation …
Structure and Tracer Kinetics-Driven Dynamic PET Reconstruction
J Cui, Z Qin, S Chen, Y Chen… – IEEE Transactions on …, 2019 – ieeexplore.ieee.org
Page 1. 2469-7311 (c) 2019 IEEE. Personal use is permitted, but republication/ redistribution requires IEEE permission. See http://www.ieee.org/ publications_standards/publications/rights/index.html for more information. This …
Egocentric processing in the roll plane and dorsal parietal cortex: a TMS-ERP study of the subjective visual vertical
L Willacker, J Dowsett, M Dieterich, PCJ Taylor – Neuropsychologia, 2019 – Elsevier
… Fig. 1. A: Location of the right parietal and left parietal TMS sites for all 32 participants, overlaid on a 3D reconstruction of the template 152-MNI brain (peeling depth: 14 mm). B: Location of the right parietal and left parietal TMS sites for an example participant. C: Trial sequence …
Mathematical models and simulation of tumor growth, radiation response, and micro-environment
E Dahlman – 2019 – conservancy.umn.edu
Page 1. Mathematical models and simulation of tumor growth, radiation response, and micro–environment A Thesis SUBMITTED TO THE FACULTY OF THE UNIVERSITY OF MINNESOTA BY Erik Lars Dahlman IN PARTIAL FULFILLMENT OF THE REQUIREMENTS …
Statistically Segregated k-Space Sampling for Accelerating Multiple-Acquisition MRI
LK Senel, T Kilic, A Gungor… – IEEE transactions on …, 2019 – ieeexplore.ieee.org
… transform domain (?) [31]. For both numerical phantom and in vivo data, we primarily consid- ered 2D acceleration in 3D Cartesian acquisitions, where the readout dimension is fully sampled. Fourier transformation was performed …
Image-Guided Surgery Through Internet of Things
S Vijayalakshmi – Internet of Things in Biomedical Engineering, 2019 – Elsevier
… There are various methods of spinal image guidance, such as fluoroscopy, CT-based, and 3D fluoroscopy. IGS system software in deep brain simulation is used to track the surgical device [3]. An open source tool for IGS is NEURONAV, which allows surgical planning, rigid and …
Care for Biofeedback and Neurofeedback Instrumentation
D Moss, D Hagedorn, D Combatalade… – Biofeedback, 2019 – aapb-biofeedback.com
… Limited output transcranial electrical stimulation (LOTES-2017): Engineering principles, regulatory statutes, and industry standards for wellness, over-the-counter, or prescription devices with low risk. Brain Simulation, 11, 134–157 … The boom in 3D-printed sensor technology …
Cloud Simulation for Large-Scale Agent-Based Traffic Simulations
D Zehe – 2019 – mediatum.ub.tum.de
Page 1. TECHNISCHE UNIVERSIT¨AT M¨UNCHEN Lehrstuhl für Robotik, Künstliche Intelligenz und Echtzeitsysteme Cloud Simulation for Large-Scale Agent-Based Traffic Simulations Daniel Zehe Vollständiger Abdruck der …
A Multi-Channel Asynchronous Neurostimulator With Artifact Suppression for Neural Code-Based Stimulations
S Elyahoodayan, W Jiang, H Xu, D Song – Frontiers in neuroscience, 2019 – frontiersin.org
… V) across the interface: V ? ( t ) = I ? R s + I ? R p ? ( 1 – e – t R P ? C dl ) ( 2 ). An example of the voltage transient in response to a stimulation current pulse of 60 ?A, 200 ?s is shown in Figure 3d. In this model, capacitive charge …
Underwater target recognition method based on t-SNE and stacked nonnegative constrained denoising autoencoder
Y Chen, X Xu, B Zhou, H Quan – 2019 – nopr.niscair.res.in
… Not only new theoretical algorithms are continuing to be introduced11-15 but also the practical applications such as image recognition, behavior recognition, speech signal processing, human brain simulation and so on are increasing16-20 …
Integrated printed microfluidic biosensors
JFC Loo, AHP Ho, APF Turner, WC Mak – Trends in biotechnology, 2019 – Elsevier
… answer diagnostics. Printing techniques used to fabricate 2D, 3D, or 4D microfluidics yield both simple and complex microfluidic configurations to suit particular applications. Fabrication … 3D-Printed Microfluidics. Microfluidic printing on …
2019 George A. Jeffrey NanoExplorers Symposium
FN Kusch Auditorium – pdfs.semanticscholar.org
… proteins. Current treatments include surgeries and medication such as Deep Brain Simulation and Levodopa respectively … analysis. The preserved crystals will be sent for X-ray analysis to obtain a 3D structure of the protein …
Virtual and Augmented Reality in Education, Art, and Museums
G Guazzaroni, AS Pillai – 2019 – books.google.com
… Coverage • Artificial Life • Machine Learning • Automated Reasoning • Cognitive Informatics • Synthetic Emotions • Brain Simulation • Algorithmic Learning • Adaptive and … Emerging applications such as ARCHEOGUIDE, ARCO, and 3D-MURALE have allowed museum-goers to …
Introducing separable utility regions in a motivational engine for cognitive developmental robotics
A Prieto, A Romero, F Bellas… – Integrated Computer …, 2019 – content.iospress.com
Cognitive Developmental Robotics relies on lifelong open-ended learning processes, where mechanisms are needed to allow the robot to self-discover and self-select goals as well as to self-define its state space evaluation with regards to them. Thus,.
Intelligent Detection of Glaucoma Using Ballistic Optical Imaging
PSJ Kumar, X Li, T Binford, Y Yuan, W Hu… – Advanced …, 2019 – researchgate.net
… from Harvard University, Cambridge, United States in April 2019 for his contribution in the project titled “Deep Robotics and Human Brain Simulation using Neural … The enhanced recital in 2D or 3D might be recognized to the noise attenuation of principal component analysis …
Circadian modulation of neurons and astrocytes controls synaptic plasticity in hippocampal area CA1
JP McCauley, M Petroccione, L D’Brant, G Todd… – 2019 – papers.ssrn.com
… 0.85; Fig. 3D). The … Fig. 3). After this incubation time, we fixed the slices, mounted them on slides and collected z-stacks using the 3D Cell Explorer digital holo-tomographic microscope (Nanolive, Ecublens, Switzerland). Plasma membranes …
A Molecular Odorant Transduction Model and the Complexity of Combinatorial Encoding in the Drosophila Antenna
AAA Lazar, CH Yeh – bioRxiv, 2019 – biorxiv.org
… (left) 3D view; (right) top view … The 3D tensor, b with entries [b]ron, where r = 1,2, …, R, is the receptor type, o = 1,2…, O, denotes the odorant and n = 1,2, …, N, denotes the neuron index, is called the odorant-receptor binding rate and models the association rate between …
cuPentBatch—A batched pentadiagonal solver for NVIDIA GPUs
A Gloster, LÓ Náraigh, KE Pang – Computer Physics Communications, 2019 – Elsevier
… The need for batch solving these is apparent when preforming parameter studies or when solving 2D/3D systems with inversion … Examples of problems requiring batched solutions of matrices include Brain Simulation [1], [2], computational fluid dynamics [3] and numerical linear …
The Triple-Helix sub-revolution and the hype of Industry 4.0
RJ Steenkamp – ieomsociety.org
… Industry 4.0 dimensions • Disruption • Digitization • Exponential change • Smart factories • Agility • 3D printing • Big data • Artificial intelligence • Cloud computing … University, Finland – the university is known for more than 3000 doctoral students and its brain simulation technology …
Parallel Rendering and Large Data Visualization
S Eilemann – arXiv preprint arXiv:1902.08755, 2019 – arxiv.org
… data, in par- ticular visual analysis is a powerful tool to gain intuitive insight into the spatial structure and relations of 3D data sets … 1.1 Large Data Visualisation of a Brain Simulation, Molecular Visu- alisation in the Cave 2, Exploration of EM Stack Reconstructions in a Cave …
Bio-inspired computing leveraging the synchronization of magnetic nano-oscillators
P Talatchian – 2019 – tel.archives-ouvertes.fr
… al. [6]. b) Image of the NEMS implementation including the feed-back loop, extracted from [7]. 39 Figure 20 Figure extracted from [8]. a) Illustration of the electronic band structure of a 3d transition metal as Co or Ni. b) Equivalent …
Modélisation, prédiction et optimisation de la consommation énergétique d’applications MPI à l’aide de SimGrid
F Heinrich – 2019 – theses.fr
… in aviation, material science), geology (oil exploration, earthquakes), meteorology (weather forecasts), medicine (eg, HIV, brain simulation), biology (eg … GPUs, originally developed to render 3D scenes in video games, have a lean implementation, a commodity hardware and are …
Mathematical and Computational Oncology: First International Symposium, ISMCO 2019, Lake Tahoe, NV, USA, October 14–16, 2019, Proceedings
G Bebis, T Benos, K Chen, K Jahn, E Lima – 2019 – books.google.com
… Furthermore, an efficient combination of comprehensive genomics with 3D microcancer functional model systems can further refine treatment decisions. However, applying such disruptive technologies in clinical practice is not trivial …
Modeling, Prediction and Optimization of Energy Consumption of MPI Applications using SimGrid
F Heinrich – 2019 – tel.archives-ouvertes.fr
… of researchers from both academia and industry and covers a large variety of fields, such as engineering (eg, aero- dynamics in aviation, material science), geology (oil exploration, earthquakes), meteorology (weather forecasts), medicine (eg, HIV, brain simulation), biology …
A multipixel diffuse correlation spectroscopy system based on a single photon avalanche diode array
JD Johansson, D Portaluppi, M Buttafava… – Journal of …, 2019 – Wiley Online Library
Page 1 …
Feasibility of Using the Utah Array for Long-Term Fully Implantable Neuroprosthesis Systems
A Bullard – 2019 – deepblue.lib.umich.edu
Page 1. Feasibility of Using the Utah Array for Long-Term Fully Implantable Neuroprosthesis Systems by Autumn Bullard A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy …
Innovations in model-based software and systems engineering
K Hölldobler, J Michael, JO Ringert, B Rumpe… – Journal of Object …, 2019 – jot.fm
… This of course holds for software development, but will more and more also hold for systems development, where hardware is designed in a model-based way and is quality ensured, eg, through virtual integration as well as 3D-printer based prototyping …